Resources

Butler, D. G., B. R. Cullis, A. R. Gilmour, B. J. Gogel, and R. Thompson. 2018. ASReml-r Reference Manual (version 4). Hemel Hempstead, UK: VSN International Ltd. https://asreml.kb.vsni.co.uk/wp-content/uploads/sites/3/2018/02/ASReml-R-Reference-Manual-4.pdf.

Carpenter, B., A. Gelman, M. D. Hoffman, D. Lee, B. Goodrich, M. Betancourt, and... A. Riddell. 2017. “Stan: A Probabilistic Programming Language.” Journal of Statistical Software 74. https://www.jstatsoft.org/article/view/v076i01.

Gelman, A., A. Vehtari, D. Simpson, C. C. Margossian, B. Carpenter, Y. Yao, and... M. Modrák. 2020. “Bayesian Workflow.” arXiv Preprint arXiv:2011.01808. https://arxiv.org/abs/2011.01808.

Gupta, A. K., and D. K. Nagar. 2018. Matrix Variate Distributions. CRC Press. https://www.routledge.com/Matrix-Variate-Distributions/Gupta-Nagar/p/book/9781584880462.

Hadfield, J. D. 2010. “MCMC Methods for Multi-Response Generalized Linear Mixed Models: The MCMCglmm r Package.” Journal of Statistical Software 33. https://mran.microsoft.com/snapshot/2016-10-12/web/packages/MCMCglmm/vignettes/Overview.pdf.

Lemoine, N. P. 2019. “Moving Beyond Noninformative Priors: Why and How to Choose Weakly Informative Priors in Bayesian Analyses.” Oikos 128. https://onlinelibrary.wiley.com/doi/full/10.1111/oik.05985.

Martin, J. S., and A. V. Jaeggi. 2021. “Social Animal Models for Quantifying Plasticity, Assortment, and Selection on Interacting Phenotypes.” Journal of Evolutionary Biology. https://doi.org/10.1111/jeb.13900.

McElreath, R. 2020. Statistical Rethinking: A Bayesian Course with Examples in r and Stan. 2nd ed. CRC Press. https://xcelab.net/rm/statistical-rethinking/.

Nishio, M., and A. Arakawa. 2019. “Performance of Hamiltonian Monte Carlo and No-u-Turn Sampler for Estimating Genetic Parameters and Breeding Values.” Genetics Selection Evolution 51. https://gsejournal.biomedcentral.com/articles/10.1186/s12711-019-0515-1.

R Core Team. 2020. R: A Language and Environment for Statistical Computing. Vienna, Austria: R Foundation for Statistical Computing. https://www.R-project.org.

Stinchcombe, J. R., A. K. Simonsen, and M. W. Blows. 2014. “Estimating Uncertainty in Multivariate Responses to Selection.” Evolution 68. https://onlinelibrary.wiley.com/doi/full/10.1111/evo.12321.

Thomson, C. E., I. S. Winney, O. C. Salles, and B. Pujol. 2018. “A Guide to Using a Multiple-Matrix Animal Model to Disentangle Genetic and Nongenetic Causes of Phenotypic Variance.” PloS One 13. https://journals.plos.org/plosone/article/comments?id=10.1371/journal.pone.0197720.